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Reclamation of coal fly ash, a legacy waste material, provides an alternative pathway for the recovery of rare earth elements (REEs) while reducing the environmental stresses that stem from traditional mining. The reactive transport processes underlying the recovery of REEs from ash wastes, however, are yet to be fully elucidated owing to the physicochemical complexity of the micro/nanoscale fly ash particles, including the crystallinity of the particulate matrix. In this work, we use transmission electron microscopy to characterize the material properties of ash particles and reveal the impact of crystallinity on the reactive transport processes governing access to and recovery of the encapsulated REEs. Our results show, for the first time, two distinct crystalline structures of REE-bearing aluminosilicate particles: dense amorphous matrices that facilitate the exchange of chemical species through their lattice interstices and porous polycrystalline matrices characterized by connected intraparticle pores and chemical inertness to leaching solutions. Notably, the presence of matrix crystallinity, or the lack thereof, governs the extent of reagents consumed parasitically by secondary reactions with the aluminosilicate matrix. Our work reveals how the variability of crystalline structures of the ash matrices hosting REEs defines the pathways for the recovery of REEs, providing key insights required for the development of targeted recovery processes.